Stem-loop ola-mir-458

Accession

MI0019477

Description

Oryzias latipes ola-mir-458 precursor miRNA

Sequence

5089 reads, 108.0 reads per million, 41 experiments

cuccaccggcugcagacuccAGCGCCAUUUUCAGAGCUAUAagugugaagugaugAUAGCUCUUUCAAUGGUACUGCaguaagcauucacaugag
(((....((.(((..(((.(((.((((((...((((((((..((........)).))))))))...)))))).))).)))..))).))....)))

Structure

   cacc  c   ag   c   C      UUC        Aa  gug 
cuc    gg ugc  acu cAG GCCAUU   AGAGCUAU  gu   a
|||    || |||  ||| ||| ||||||   ||||||||  ||    
gag    cu acg  uga GUC UGGUAA   UCUCGAUA  ua   a
   uaca  u   aa   C   A      CUU        -g  gug 

Annotation confidence High

Genome context

10: 25327849-25327943 [-]

Mature ola-miR-458-5p

• Accession: MIMAT0057118
• Description: Oryzias latipes ola-miR-458-5p mature miRNA
• Sequence: 21 - AGCGCCAUUUUCAGAGCUAUA - 41
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-458-3p

• Accession: MIMAT0022595
• Description: Oryzias latipes ola-miR-458-3p mature miRNA
• Sequence: 56 - AUAGCUCUUUCAAUGGUACUGC - 77
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8