Stem-loop ola-mir-187

Accession

MI0019478

Description

Oryzias latipes ola-mir-187 precursor miRNA

Sequence

28324 reads, 507.0 reads per million, 44 experiments

ugguugggccagcGGCUGCAACACAGGACAUGGGUccugcuucuccuccccgcUCGUGUCUUGUGUUGCAGCCAGUggagcugccua
.(((.(..(((..((((((((((((((((((((((................))))))))))))))))))))))..)))..).)))..

Structure

-u   u gg   gc                      ccugcuu 
  ggu g  cca  GGCUGCAACACAGGACAUGGGU       c
  ||| |  |||  ||||||||||||||||||||||        
  ccg c  ggU  CCGACGUUGUGUUCUGUGCUcg       u
au   u ga   GA                      ccccucc 

Annotation confidence High

Genome context

11: 7840464-7840550 [+]

Mature ola-miR-187-5p

• Accession: MIMAT0022596
• Description: Oryzias latipes ola-miR-187-5p mature miRNA
• Sequence: 14 - GGCUGCAACACAGGACAUGGGU - 35
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-187-3p

• Accession: MIMAT0057119
• Description: Oryzias latipes ola-miR-187-3p mature miRNA
• Sequence: 54 - UCGUGUCUUGUGUUGCAGCCAGU - 76
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8