miRBase entry: ola-mir-30c

Stem-loop ola-mir-30c


Accession
MI0019480
Description
Oryzias latipes ola-mir-30c precursor miRNA


Sequence

accacucucugaaucuaauggaaauguaaauuuguugucuuguagacugucuccaggcaUGUAAACAUCCUACACUCUCAGCuguguugucauggagcugggagaggggu
(((.((((((.(.((((.(((.((((((.....((((...(((((..(((...((....))...)))..)))))....)))))))))).)))))))..).)))))).)))

Structure
   a      g -a    a   a      aauuu    -ucu     ac   cuc  g 
acc cucucu a  ucua ugg aaugua     guug    uguag  ugu   ca g
||| |||||| |  |||| ||| ||||||     ||||    |||||  |||   ||  
ugg gagagg u  aggu acu uugugu     CGAC    ACAUC  ACA   GU c
   g      g cg    -   g      -----    UCUC     CU   AAU  a 


Annotation confidence Not enough data
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Genome context
11: 21880471-21880580 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ola-mir-30c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ola-miR-30c

Accession MIMAT0022598
Description Oryzias latipes ola-miR-30c mature miRNA
Sequence 60 - UGUAAACAUCCUACACUCUCAGC - 82
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21143817
    Discovery and characterization of medaka miRNA genes by next generation sequencing platform
    Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
    BMC Genomics (2010) 11:S8