Stem-loop ola-mir-30d

Accession

MI0019481

Description

Oryzias latipes ola-mir-30d precursor miRNA

Literature search

2 open access papers mention ola-mir-30d
(4 sentences)

Sequence

247509 reads, 3312.0 reads per million, 49 experiments

gucacacuuuggcacuuugggguUGUAAACAUCCCCGACUGGAAGCUgugucugcgcagagCUUUCAGUCUGAUGUUUGCAGCugcagguugcuccguucuccac
..........((((.((((.(((((((((((((...(((((((((((.(((....))).))))))))))).))))))))))))).)))).))))...........

Structure

-gucacacuuu    c    g             CCC           g   c 
           ggca uuug gguUGUAAACAUC   GACUGGAAGCU ugu u
           |||| |||| |||||||||||||   ||||||||||| |||  
           ucgu ggac uCGACGUUUGUAG   CUGACUUUCga acg g
caccucuugcc    u    g             --U           g   c 

Annotation confidence High

Genome context

11: 24547813-24547917 [+]

Mature ola-miR-30d-5p

• Accession: MIMAT0022599
• Description: Oryzias latipes ola-miR-30d-5p mature miRNA
• Sequence: 24 - UGUAAACAUCCCCGACUGGAAGCU - 47
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-30d-3p

• Accession: MIMAT0022600
• Description: Oryzias latipes ola-miR-30d-3p mature miRNA
• Sequence: 62 - CUUUCAGUCUGAUGUUUGCAGC - 83
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8