Stem-loop ola-mir-128

Accession

MI0019482

Description

Oryzias latipes ola-mir-128 precursor miRNA

Literature search

1 open access papers mention ola-mir-128
(1 sentences)

Sequence

235778 reads, 2376.0 reads per million, 49 experiments

aaggcgcuguggcaguagaggaGGGGGCCGUUACACUGUCAGAGAuguacucugagggucUCACAGUGAACCGGUCUCUUuuccugcugcuucuguucgu
...(.((.(.((((((((.(((((((((((...((((((..(((((.(.......).)))))))))))...))))))))))).)))))))).).)).)..

Structure

aag c  u u        a           UUA      CA     g ac 
   g gc g ggcaguag ggaGGGGGCCG   CACUGU  GAGAu u  u
   | || | |||||||| |||||||||||   ||||||  ||||| |  c
   c ug c ucgucguc uuUUCUCUGGC   GUGACA  CUcug g  u
-ug u  u u        c           CAA      --     g ag 

Annotation confidence High

Genome context

11: 21614207-21614306 [-]

Mature ola-miR-128-5p

• Accession: MIMAT0057121
• Description: Oryzias latipes ola-miR-128-5p mature miRNA
• Sequence: 23 - GGGGGCCGUUACACUGUCAGAGA - 45
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-128-3p

• Accession: MIMAT0022601
• Description: Oryzias latipes ola-miR-128-3p mature miRNA
• Sequence: 61 - UCACAGUGAACCGGUCUCUU - 80
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8