Stem-loop ola-mir-455

Accession

MI0019487

Description

Oryzias latipes ola-mir-455 precursor miRNA

Sequence

255331 reads, 1646.0 reads per million, 49 experiments

ccuggcgugagggUAUGUGCCCUUGGACUACAUCGuggaagccagcaccaUGCAGUCCAUGGGCAUAUACACuugccucaugg
.....(((((((((((((((((.((((((.(((.(((........))).))).)))))).)))))))))).....))))))).

Structure

ccugg       -----          U      A   C   gaa 
     cgugagg     gUAUGUGCCC UGGACU CAU Gug   g
     |||||||     |||||||||| |||||| ||| |||    
     guacucc     CAUAUACGGG ACCUGA GUa cac   c
----g       guuCA          U      C   c   gac 

Annotation confidence Medium

Genome context

12: 7386668-7386750 [-]

Mature ola-miR-455-5p

• Accession: MIMAT0022607
• Description: Oryzias latipes ola-miR-455-5p mature miRNA
• Sequence: 14 - UAUGUGCCCUUGGACUACAUCG - 35
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-455-3p

• Accession: MIMAT0022608
• Description: Oryzias latipes ola-miR-455-3p mature miRNA
• Sequence: 51 - UGCAGUCCAUGGGCAUAUACAC - 72
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8