Stem-loop ola-mir-218b

Accession

MI0019488

Description

Oryzias latipes ola-mir-218b precursor miRNA

Sequence

718744 reads, 3645.0 reads per million, 45 experiments

auugcccaggaccccaUUGUGCUUGAUCUAACCAUGcaguggaugcucugucCAUGGUUGUGCCAAGCACCUUGgaggcuugcgagcacu
..((((((((.(((((..(((((((...(((((((((((.(....).)))..))))))))...)))))))..))).)))))).).)))..

Structure

au   - -    a  -   UU       AUC        --   u g 
  ugc c cagg cc cca  GUGCUUG   UAACCAUG  cag g a
  ||| | |||| || |||  |||||||   ||||||||  ||| |  
  acg g guuc gg gGU  CACGAAC   GUUGGUAC  guc c u
uc   a c    -  a   UC       CGU        cu   u g 

Annotation confidence High

Genome context

12: 14121562-14121651 [-]

Mature ola-miR-218b-5p

• Accession: MIMAT0022609
• Description: Oryzias latipes ola-miR-218b-5p mature miRNA
• Sequence: 17 - UUGUGCUUGAUCUAACCAUG - 36
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-218b-3p

• Accession: MIMAT0057123
• Description: Oryzias latipes ola-miR-218b-3p mature miRNA
• Sequence: 53 - CAUGGUUGUGCCAAGCACCUUG - 74
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8