Stem-loop ola-mir-301b

Accession

MI0019489

Description

Oryzias latipes ola-mir-301b precursor miRNA

Sequence

31293 reads, 228.0 reads per million, 39 experiments

cugacacaugcugaggucagcuGCUCUGACAAUGUUGCACUACUguaccauccauucuagCAGUGCAAUAGUAUUGUCAUAGCauuuggccucagcucgcucuag
.........(((((((((((.((((.(((((((((((((((.(((............))).))))))))...))))))).)))).))))))))))).........

Structure

cugacacau           c    C       ---        A   uacca 
         gcugaggucag uGCU UGACAAU   GUUGCACU CUg     u
         ||||||||||| |||| |||||||   |||||||| |||      
         cgacuccgguu aCGA ACUGUUA   UAACGUGA gau     c
gaucucgcu           u    U       UGA        C   cuuac 

Annotation confidence High

Genome context

12: 14199739-14199843 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-301b

Mature ola-miR-301b-5p

• Accession: MIMAT0022610
• Description: Oryzias latipes ola-miR-301b-5p mature miRNA
• Sequence: 23 - GCUCUGACAAUGUUGCACUACU - 44
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-301b-3p

• Accession: MIMAT0022611
• Description: Oryzias latipes ola-miR-301b-3p mature miRNA
• Sequence: 61 - CAGUGCAAUAGUAUUGUCAUAGC - 83
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8