miRBase entry: ola-mir-301b

Stem-loop ola-mir-301b

Accession

MI0019489

Description

Oryzias latipes ola-mir-301b precursor miRNA

Sequence

cugacacaugcugaggucagcuGCUCUGACAAUGUUGCACUACuguaccauccauucuagCAGUGCAAUAGUAUUGUCauagcauuuggccucagcucgcucuag
.........(((((((((((.((((.(((((((((((((((.(((............))).))))))))...))))))).)))).))))))))))).........

Structure

cugacacau           c    C       ---        A   uacca 
         gcugaggucag uGCU UGACAAU   GUUGCACU Cug     u
         ||||||||||| |||| |||||||   |||||||| |||      
         cgacuccgguu acga aCUGUUA   UAACGUGA gau     c
gaucucgcu           u    u       UGA        C   cuuac

Annotation confidence Not enough data

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Genome context

12: 14199739-14199843 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-301b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ola-miR-301b-5p

Accession	MIMAT0022610
Description	Oryzias latipes ola-miR-301b-5p mature miRNA
Sequence	23 - GCUCUGACAAUGUUGCACUAC - 43
Evidence	experimental SOLiD [1]

Mature ola-miR-301b-3p

Accession	MIMAT0022611
Description	Oryzias latipes ola-miR-301b-3p mature miRNA
Sequence	61 - CAGUGCAAUAGUAUUGUC - 78
Evidence	experimental SOLiD [1]

References

PubMed ID: 21143817
Discovery and characterization of medaka miRNA genes by next generation sequencing platform
Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
BMC Genomics (2010) 11:S8