Stem-loop ola-mir-130c

Accession

MI0019490

Description

Oryzias latipes ola-mir-130c precursor miRNA

Sequence

21944 reads, 209.0 reads per million, 45 experiments

ugguuuccauguuguuguccacuGCCCUUUUUCUGUUGCACUACUggacauugggaugagCAGUGCAAUAUUAAAAGGGCAUuggcugaugaaacagagaccca
.((((((....((((((.(((.(((((((((..(((((((((.((.............)).)))))))))..))))))))).))).))))))....))))))..

Structure

-u      caug      u   c         UC         A  ggaca 
  gguuuc    uuguug cca uGCCCUUUU  UGUUGCACU CU     u
  ||||||    |||||| ||| |||||||||  ||||||||| ||     u
  ccagag    aguagu ggu ACGGGAAAA  AUAACGUGA ga     g
ac      acaa      c   U         UU         C  guagg 

Annotation confidence High

Genome context

12: 14200032-14200135 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-130c

Mature ola-miR-130c-5p

• Accession: MIMAT0057124
• Description: Oryzias latipes ola-miR-130c-5p mature miRNA
• Sequence: 24 - GCCCUUUUUCUGUUGCACUACU - 45
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-130c-3p

• Accession: MIMAT0022612
• Description: Oryzias latipes ola-miR-130c-3p mature miRNA
• Sequence: 61 - CAGUGCAAUAUUAAAAGGGCAU - 82
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8