Stem-loop ola-mir-16

Accession

MI0019491

Description

Oryzias latipes ola-mir-16 precursor miRNA

Sequence

605275 reads, 15417.0 reads per million, 49 experiments

uuucaauauaccugcuacgcugUAGCAGCACGUAAAUAUUGGCGUgugaaaaaagcccccaacCCCAAUAUUAGCAGUGCUGCUUCagugugacgggaucaaa
..........((((.(((((((.((((((((((.((((((((.((................)).)))))))).)).)))))))).))))))).))))......

Structure

uuucaauaua    c       U        -  A        C  gugaaaa 
          ccug uacgcug AGCAGCAC GU AAUAUUGG GU       a
          |||| ||||||| |||||||| || |||||||| ||        
          gggc gugugaC UCGUCGUG CG UUAUAACC ca       a
----aaacua    a       U        A  A        C  acccccg 

Annotation confidence High

Genome context

13: 12901172-12901274 [+]

Mature ola-miR-16-5p

• Accession: MIMAT0022613
• Description: Oryzias latipes ola-miR-16-5p mature miRNA
• Sequence: 23 - UAGCAGCACGUAAAUAUUGGCGU - 45
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-16-3p

• Accession: MIMAT0057125
• Description: Oryzias latipes ola-miR-16-3p mature miRNA
• Sequence: 64 - CCCAAUAUUAGCAGUGCUGCUUC - 86
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8