Stem-loop ola-mir-100-1

Accession

MI0019492

Description

Oryzias latipes ola-mir-100-1 precursor miRNA

Sequence

835020 reads, 11011.0 reads per million, 49 experiments

ugagguaaccugcuugcagccccaAACCCGUAGAUCCGAACUUGUGucaucugacaccaCAAGCUUGCAUCUACAGGUCUGcgucugugcagcuucggcg
(((((....((((..((((.(.((.(((.((((((.(((.((((((((....)))...))))).))).)))))).))).)).).)))))))))))))...

Structure

---     uaac    uu    c c  A   C      C   A     ---   a 
   ugagg    cugc  gcag c ca ACC GUAGAU CGA CUUGU   Guc u
   |||||    ||||  |||| | || ||| |||||| ||| |||||   |||  
   gcuuc    gacg  uguc g GU UGG CAUCUA GUU GAACa   cag c
gcg     ----    --    u c  C   A      C   C     cca   u 

Annotation confidence High

Genome context

13: 19564760-19564859 [+]

Mature ola-miR-100-5p

• Accession: MIMAT0022614
• Description: Oryzias latipes ola-miR-100-5p mature miRNA
• Sequence: 25 - AACCCGUAGAUCCGAACUUGUG - 46
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-100-1-3p

• Accession: MIMAT0057126
• Description: Oryzias latipes ola-miR-100-1-3p mature miRNA
• Sequence: 60 - CAAGCUUGCAUCUACAGGUCUG - 81
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8