Stem-loop ola-mir-125c

Accession

MI0019493

Description

Oryzias latipes ola-mir-125c precursor miRNA

Literature search

1 open access papers mention ola-mir-125c
(2 sentences)

Sequence

198791 reads, 3252.0 reads per million, 48 experiments

aguuugaaauugugucucucuucgUCCCUGAGACCCUAACUUGUGACguuguucuuucauguccACGGGUUUGGCUCUCGGGAGCUgagagggaugcacggccaucu
..........((((((((((((.((.(((((((.((.((((((((((((.(......))))).)))))))).)).))))))).)).)))))))))))).........

Structure

aguuugaaau            c  C       C  U        -    u uu 
          ugugucucucuu gU CCUGAGA CC AACUUGUG ACgu g  c
          |||||||||||| || ||||||| || |||||||| |||| |   
          acguagggagag CG GGGCUCU GG UUGGGCAc ugua c  u
-ucuaccggc            U  A       C  U        c    - uu 

Annotation confidence High

Genome context

13: 19575653-19575759 [+]

Mature ola-miR-125c-5p

• Accession: MIMAT0022615
• Description: Oryzias latipes ola-miR-125c-5p mature miRNA
• Sequence: 25 - UCCCUGAGACCCUAACUUGUGAC - 47
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-125c-3p

• Accession: MIMAT0057128
• Description: Oryzias latipes ola-miR-125c-3p mature miRNA
• Sequence: 65 - ACGGGUUUGGCUCUCGGGAGCU - 86
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8