Stem-loop ola-mir-139

Accession

MI0019494

Description

Oryzias latipes ola-mir-139 precursor miRNA

Sequence

140562 reads, 1404.0 reads per million, 45 experiments

uauuauggccuggcuguauUCUACAGUGCAUGUGUCUCCAguauguuagugaugcuacUGGAGACUCGGCUCUGUUGGAAUaacaaccaggacccaacg
......(((((((.((((((((((((.((.((.((((((((((.((.......)))))))))))).)))).))).)))))).))).))))).)).....

Structure

uauuau  -     c   -      -   U  A  U          u  ua 
      gg ccugg ugu auUCUA CAG GC UG GUCUCCAgua gu  g
      || ||||| ||| |||||| ||| || || |||||||||| ||  u
      cc ggacc aca UAAGGU GUC CG GC CAGAGGUcau cg  g
-gcaac  a     a   a      U   U  -  U          -  ua 

Annotation confidence High

Genome context

13: 21690229-21690327 [+]

Mature ola-miR-139-5p

• Accession: MIMAT0022616
• Description: Oryzias latipes ola-miR-139-5p mature miRNA
• Sequence: 20 - UCUACAGUGCAUGUGUCUCCA - 40
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-139-3p

• Accession: MIMAT0057129
• Description: Oryzias latipes ola-miR-139-3p mature miRNA
• Sequence: 59 - UGGAGACUCGGCUCUGUUGGAAU - 81
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8