Stem-loop ola-mir-22-1

Accession

MI0019496

Description

Oryzias latipes ola-mir-22-1 precursor miRNA

Sequence

2188637 reads, 19381.0 reads per million, 49 experiments

acuggcugacccacagcAGUUCUUCACUGGCAAGCUUUAuguucucgugcaccagcuaAAGCUGCCAGCUGAAGAACUGuuguggucggcucuu
...((((((((.((((((((((((((((((((.(((((((((......))).....)))))))))))).))))))))))))))))))))))...

Structure

acu        c              -      A      -----   uc 
   ggcugacc acagcAGUUCUUCA CUGGCA GCUUUA     ugu  u
   |||||||| |||||||||||||| |||||| ||||||     |||   
   ucggcugg uguuGUCAAGAAGU GACCGU CGAAau     acg  c
uuc        -              C      -      cgacc   ug 

Annotation confidence High

Genome context

13: 16589470-16589563 [-]

Mature ola-miR-22-1-5p

• Accession: MIMAT0057131
• Description: Oryzias latipes ola-miR-22-1-5p mature miRNA
• Sequence: 18 - AGUUCUUCACUGGCAAGCUUUA - 39
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-22-3p

• Accession: MIMAT0022618
• Description: Oryzias latipes ola-miR-22-3p mature miRNA
• Sequence: 59 - AAGCUGCCAGCUGAAGAACUG - 79
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8