Stem-loop ola-mir-21-1

Accession

MI0019497

Description

Oryzias latipes ola-mir-21-1 precursor miRNA

Literature search

1 open access papers mention ola-mir-21-1
(5 sentences)

Sequence

4287762 reads, 42824.0 reads per million, 49 experiments

acuucaccaccuugucggcUAGCUUAUCAGACUGGUGUUGgagguuccauuugcacggcaACAACGGUCUGUAAGCUGGCUgacauuguggggcu
......((((..((((((((((((((.(((((((.(((((..(((.......)).)..))))).)))))))))))))))))))))..))))....

Structure

acuuca    cu              U       G     ga -  uc 
      ccac  ugucggcUAGCUUA CAGACUG UGUUG  g gu  c
      ||||  |||||||||||||| ||||||| |||||  | ||  a
      ggug  acagUCGGUCGAAU GUCUGGC ACAac  c cg  u
--ucgg    uu              -       A     gg a  uu 

Annotation confidence High

Genome context

13: 24451854-24451948 [-]

Mature ola-miR-21-5p

• Accession: MIMAT0022619
• Description: Oryzias latipes ola-miR-21-5p mature miRNA
• Sequence: 20 - UAGCUUAUCAGACUGGUGUUG - 40
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-21-1-3p

• Accession: MIMAT0057133
• Description: Oryzias latipes ola-miR-21-1-3p mature miRNA
• Sequence: 61 - ACAACGGUCUGUAAGCUGGCU - 81
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8