Stem-loop ola-mir-301a

Accession

MI0019498

Description

Oryzias latipes ola-mir-301a precursor miRNA

Literature search

2 open access papers mention ola-mir-301a
(2 sentences)

Sequence

31975 reads, 471.0 reads per million, 43 experiments

gcccgagcuguuggcagguGCUCUGACUUCAUUGCACUACUguaucagacaucuagUAGUGCAAUAGUAUUGUCAAAGCauuugaaaacugcaaagagc
((.(..((.(((..((((((((.((((..(((((((((((((...........)))))))))))).)....)))).))))))))..))).))...).))

Structure

  c -ga  u   gg        C    --UU -            uauc 
gc c   gc guu  cagguGCU UGAC    C AUUGCACUACUg    a
|| |   || |||  |||||||| ||||    | ||||||||||||    g
cg g   cg caa  guuuaCGA ACUG    G UAACGUGAUgau    a
  a aaa  u   aa        A    UUAU A            cuac 

Annotation confidence High

Genome context

14: 13145539-13145637 [+]

Mature ola-miR-301a-5p

• Accession: MIMAT0022620
• Description: Oryzias latipes ola-miR-301a-5p mature miRNA
• Sequence: 20 - GCUCUGACUUCAUUGCACUACU - 41
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-301a-3p

• Accession: MIMAT0022621
• Description: Oryzias latipes ola-miR-301a-3p mature miRNA
• Sequence: 57 - UAGUGCAAUAGUAUUGUCAAAGC - 79
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8