Stem-loop ola-mir-192

Accession

MI0019500

Description

Oryzias latipes ola-mir-192 precursor miRNA

Sequence

aagcguuugggcacaaggugaUGACCUAUGAAUUGACAGCCAguuacuucuaacaccugCCUGUCAGUUCUGUAGGCCACUGcugcguuugucccccu
........(((.((((((((.((.(((((((((((((((.(((.............))).)))))))))).))))).)).))))....)))).)))..

Structure

aagcguuu   c    ----    a  A     -          C   uuacu 
        ggg acaa    ggug UG CCUAU GAAUUGACAG CAg     u
        ||| ||||    |||| || ||||| |||||||||| |||     c
        ccc uguu    ucGU AC GGAUG CUUGACUGUC guc     u
------uc   c    ugcg    C  C     U          C   cacaa 

Annotation confidence Not enough data

Genome context

14: 20215822-20215919 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-192

Mature ola-miR-192-5p

• Accession: MIMAT0022624
• Description: Oryzias latipes ola-miR-192-5p mature miRNA
• Sequence: 22 - UGACCUAUGAAUUGACAGCCA - 42
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-192-3p

• Accession: MIMAT0022625
• Description: Oryzias latipes ola-miR-192-3p mature miRNA
• Sequence: 60 - CCUGUCAGUUCUGUAGGCCACUG - 82
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8