Stem-loop ola-mir-144

Accession

MI0019501

Description

Oryzias latipes ola-mir-144 precursor miRNA

Sequence

30358 reads, 538.0 reads per million, 38 experiments

cacggcuccaucuugagcccuggacaGGAUAUCAUCUUAUACUGUAAGUuuaauaaagagacaCUACAGUAUAGAUGAUGUACUauccaggguuucauuccaccucug
..(((........(((((((((((.((.(((((((((.((((((((.((((.......))))..))))))))))))))))).)).))))))).))))........)))

Structure

ca   cuccaucu    -       c  G         U        -A    aa 
  cgg        ugag cccugga aG AUAUCAUCU AUACUGUA  GUuu  u
  |||        |||| ||||||| || ||||||||| ||||||||  ||||  a
  guc        acuu gggaccu UC UGUAGUAGA UAUGACAU  caga  a
--   uccaccuu    u       a  A         -        Ca    ga 

Annotation confidence Medium

Genome context

14: 21443523-21443630 [+]

Mature ola-miR-144-5p

• Accession: MIMAT0022626
• Description: Oryzias latipes ola-miR-144-5p mature miRNA
• Sequence: 27 - GGAUAUCAUCUUAUACUGUAAGU - 49
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-144-3p

• Accession: MIMAT0057135
• Description: Oryzias latipes ola-miR-144-3p mature miRNA
• Sequence: 64 - CUACAGUAUAGAUGAUGUACU - 84
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8