Stem-loop ola-mir-21-2

Accession

MI0019502

Description

Oryzias latipes ola-mir-21-2 precursor miRNA

Literature search

1 open access papers mention ola-mir-21-2
(5 sentences)

Sequence

4880830 reads, 55654.0 reads per million, 49 experiments

cccggccugucagaUAGCUUAUCAGACUGGUGUUGgcuguuaagauugcaaggCGACAACAGUCUGUAGGCUGUCugacauuuuggg
(((((..((((((((((((((.(((((((.(((((.((((.......)).)).))))).)))))))))))))))))))))..)))))

Structure

     cc              U       G     g  -  ua 
cccgg  ugucagaUAGCUUA CAGACUG UGUUG cu gu  a
|||||  |||||||||||||| ||||||| ||||| || ||  g
ggguu  acaguCUGUCGGAU GUCUGAC ACAGC ga cg  a
     uu              -       A     g  a  uu 

Annotation confidence High

Genome context

14: 22568052-22568138 [+]

Mature ola-miR-21-5p

• Accession: MIMAT0022619
• Description: Oryzias latipes ola-miR-21-5p mature miRNA
• Sequence: 15 - UAGCUUAUCAGACUGGUGUUG - 35
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-21-2-3p

• Accession: MIMAT0057134
• Description: Oryzias latipes ola-miR-21-2-3p mature miRNA
• Sequence: 54 - CGACAACAGUCUGUAGGCUGUC - 75
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8