Stem-loop ola-mir-125b-2

Accession

MI0019503

Description

Oryzias latipes ola-mir-125b-2 precursor miRNA

Literature search

3 open access papers mention ola-mir-125b-2
(4 sentences)

Sequence

205254 reads, 2957.0 reads per million, 48 experiments

guagacucugucguacuucaccugcUCCCUGAGACCCUAACUUGUGAgcucucuugauaaaaaaucACGGGUUAGGCUCUUGGGACGCgggcggagggcacaaucgac
........(((.((.((((.(((((((((.((((.((((((((((((.................)))))))))))).)))))))).))))).)))).)))))......

Structure

guagacuc   c  a    a     -    U    C            gcucucu 
        ugu gu cuuc ccugc UCCC GAGA CCUAACUUGUGA       u
        ||| || |||| ||||| |||| |||| ||||||||||||       g
        aca cg gagg gggCG AGGG UUCU GGAUUGGGCAcu       a
--cagcua   -  g    c     C    -    C            aaaaaau 

Annotation confidence High

Genome context

14: 1144184-1144291 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ola-mir-125b-2

Mature ola-miR-125b-5p

• Accession: MIMAT0022627
• Description: Oryzias latipes ola-miR-125b-5p mature miRNA
• Sequence: 26 - UCCCUGAGACCCUAACUUGUGA - 47
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-125b-2-3p

• Accession: MIMAT0057136
• Description: Oryzias latipes ola-miR-125b-2-3p mature miRNA
• Sequence: 67 - ACGGGUUAGGCUCUUGGGACGC - 88
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8