Stem-loop ola-let-7c

Accession

MI0019504

Description

Oryzias latipes ola-let-7c precursor miRNA

Literature search

2 open access papers mention ola-let-7c
(16 sentences)

Sequence

1050351 reads, 19083.0 reads per million, 48 experiments

augugugcauccggguUGAGGUAGUAGGUUGUAUGGUUuagaauuacacccugggaguuaaCUGUACAACCUUCUAGCUUUCCuuggagcgcacgu
((((((((.((((((..(((.(((.(((((((((((((...(((..(......)..)))))))))))))))).))).)))..))))))))))))))

Structure

        a      uU   G   U             uag   ua ac 
augugugc uccggg  GAG UAG AGGUUGUAUGGUU   aau  c  c
|||||||| ||||||  ||| ||| |||||||||||||   |||  |   
ugcacgcg agguuC  UUC AUC UCCAACAUGUCaa   uug  g  c
        -      CU   G   U             ---   ag gu 

Annotation confidence High

Genome context

14: 1150882-1150977 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ola-let-7c

Mature ola-let-7c-5p

• Accession: MIMAT0022628
• Description: Oryzias latipes ola-let-7c-5p mature miRNA
• Sequence: 17 - UGAGGUAGUAGGUUGUAUGGUU - 38
• Evidence: experimental ; SOLiD [1]

Mature ola-let-7c-3p

• Accession: MIMAT0057138
• Description: Oryzias latipes ola-let-7c-3p mature miRNA
• Sequence: 62 - CUGUACAACCUUCUAGCUUUCC - 83
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8