Stem-loop ola-mir-99

Accession

MI0019505

Description

Oryzias latipes ola-mir-99 precursor miRNA

Literature search

1 open access papers mention ola-mir-99
(1 sentences)

Sequence

558039 reads, 4280.0 reads per million, 49 experiments

ugguauuuuggccauuuggcacaAACCCGUAGAUCCGAUCUUGUGgaaaaucugacggcaCAAGCUCGCCUCUGUGGGUCUCugucaguguggugugaacaccg
.(((.(((..(((((((((((...(((((((((..(((.((((((.............)))))).)))..)))))))))...)))))).)))))..))).))).

Structure

u   a   ug     -      caA         UC   U      gaaaa 
 ggu uuu  gccau uuggca   ACCCGUAGA  CGA CUUGUG     u
 ||| |||  ||||| ||||||   |||||||||  ||| ||||||     c
 cca aag  uggug gacugu   UGGGUGUCU  GCU GAACac     u
g   c   ug     u      CUC         CC   C      ggcag 

Annotation confidence High

Genome context

14: 1151199-1151302 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ola-mir-99

Mature ola-miR-99-5p

• Accession: MIMAT0057139
• Description: Oryzias latipes ola-miR-99-5p mature miRNA
• Sequence: 24 - AACCCGUAGAUCCGAUCUUGUG - 45
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-99-3p

• Accession: MIMAT0022629
• Description: Oryzias latipes ola-miR-99-3p mature miRNA
• Sequence: 61 - CAAGCUCGCCUCUGUGGGUCUC - 82
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8