miRBase entry: ola-mir-99

Stem-loop ola-mir-99

Accession

MI0019505

Description

Oryzias latipes ola-mir-99 precursor miRNA

Sequence

ugguauuuuggccauuuggcacaaacccguagauccgaucuuguggaaaaucugacggcaCAAGCUCGCCUCUGUGGGUCUCugucaguguggugugaacaccg
.(((.(((..(((((((((((...(((((((((..(((.((((((.............)))))).)))..)))))))))...)))))).)))))..))).))).

Structure

u   a   ug     -      caa         uc   u      gaaaa 
 ggu uuu  gccau uuggca   acccguaga  cga cuugug     u
 ||| |||  ||||| ||||||   |||||||||  ||| ||||||     c
 cca aag  uggug gacugu   UGGGUGUCU  GCU GAACac     u
g   c   ug     u      CUC         CC   C      ggcag

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

14: 1151199-1151302 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ola-mir-99

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ola-miR-99

Accession	MIMAT0022629
Description	Oryzias latipes ola-miR-99 mature miRNA
Sequence	61 - CAAGCUCGCCUCUGUGGGUCUC - 82
Evidence	experimental SOLiD [1]

References

PubMed ID: 21143817
Discovery and characterization of medaka miRNA genes by next generation sequencing platform
Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
BMC Genomics (2010) 11:S8