Stem-loop ola-mir-22-2

Accession

MI0019506

Description

Oryzias latipes ola-mir-22-2 precursor miRNA

Sequence

1069624 reads, 7761.0 reads per million, 49 experiments

uauagcugacacacagcuGUUCUUCACUGGCAAGCUUUAuguuucuauacacaugcuaAAGCUGCCAGCUGAAGAACUGcucuggucagcccug
....((((((.((.(((.((((((((((((((.((((((.((............)))))))))))))).)))))))).))).))))))))....

Structure

uaua      a  c   u        -      A      u  uucua 
    gcugac ca agc GUUCUUCA CUGGCA GCUUUA gu     u
    |||||| || ||| |||||||| |||||| |||||| ||      
    cgacug gu ucG CAAGAAGU GACCGU CGAAau cg     a
gucc      -  c   U        C      -      -  uacac 

Annotation confidence High

Genome context

14: 8560446-8560539 [-]

Mature ola-miR-22-2-5p

• Accession: MIMAT0057132
• Description: Oryzias latipes ola-miR-22-2-5p mature miRNA
• Sequence: 19 - GUUCUUCACUGGCAAGCUUUA - 39
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-22-3p

• Accession: MIMAT0022618
• Description: Oryzias latipes ola-miR-22-3p mature miRNA
• Sequence: 59 - AAGCUGCCAGCUGAAGAACUG - 79
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8