Stem-loop ola-mir-125b-1

Accession

MI0019507

Description

Oryzias latipes ola-mir-125b-1 precursor miRNA

Literature search

2 open access papers mention ola-mir-125b-1
(3 sentences)

Sequence

204868 reads, 3639.0 reads per million, 49 experiments

aaccuguaccucucucauUCCCUGAGACCCUAACUUGUGAcguuuugcucugaugugcACGGGUUGGGCUCUUGGGAGCUgcgaggggcacucacacaucu
.....((.((((((.(((((((.((((.((((((((((((((((.......))))).))))))))))).))))))))).)).)))))).))..........

Structure

-----aaccu  a      u  -     U    C           -     uu 
          gu ccucuc ca uUCCC GAGA CCUAACUUGUG Acguu  g
          || |||||| || ||||| |||| ||||||||||| |||||  c
          ca ggggag gU GAGGG UUCU GGGUUGGGCAc uguag  u
ucuacacacu  c      c  C     -    C           g     uc 

Annotation confidence High

Genome context

14: 15646480-15646580 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ola-mir-125b-1

Mature ola-miR-125b-5p

• Accession: MIMAT0022627
• Description: Oryzias latipes ola-miR-125b-5p mature miRNA
• Sequence: 19 - UCCCUGAGACCCUAACUUGUGA - 40
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-125b-1-3p

• Accession: MIMAT0057137
• Description: Oryzias latipes ola-miR-125b-1-3p mature miRNA
• Sequence: 59 - ACGGGUUGGGCUCUUGGGAGCU - 80
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8