Stem-loop ola-let-7a-4

Accession

MI0019508

Description

Oryzias latipes ola-let-7a-4 precursor miRNA

Literature search

3 open access papers mention ola-let-7a-4
(29 sentences)

Sequence

2551353 reads, 47732.0 reads per million, 49 experiments

uuccaguguuccgcagguUGAGGUAGUAGGUUGUAUAGUUcagagugacaccacaggagauaaCUGUACAGCCUCCUAGCUUUCCcugaggaaacacaa
.....(((((((.((((..(((.(((.((((((((((((((...(((....)))....))..)))))))))))).))).)))..)))).)).)))))..

Structure

uucca     -  g    uU   G   U            --  -aga   a 
     guguu cc cagg  GAG UAG AGGUUGUAUAGU  Uc    gug c
     ||||| || ||||  ||| ||| ||||||||||||  ||    |||  
     cacaa gg gucC  UUC AUC UCCGACAUGUCa  ag    cac a
---aa     a  a    CU   G   C            au  agga   c 

Annotation confidence High

Genome context

14: 15650352-15650450 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ola-let-7a-4

Mature ola-let-7a-5p

• Accession: MIMAT0022566
• Description: Oryzias latipes ola-let-7a-5p mature miRNA
• Sequence: 19 - UGAGGUAGUAGGUUGUAUAGUU - 40
• Evidence: experimental ; SOLiD [1]

Mature ola-let-7a-4-3p

• Accession: MIMAT0057086
• Description: Oryzias latipes ola-let-7a-4-3p mature miRNA
• Sequence: 64 - CUGUACAGCCUCCUAGCUUUCC - 85
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8