Stem-loop ola-mir-100-2

Accession

MI0019509

Description

Oryzias latipes ola-mir-100-2 precursor miRNA

Sequence

777556 reads, 11009.0 reads per million, 49 experiments

aacggguaacgccagcugccacaAACCCGUAGAUCCGAACUUGUGgugacuggcugcgCAAGCUCGUAUCUAUAGGUAUGugucuuccuggcaaauacagcu
.....(((..(((((..(.((((.(((.((((((.(((.((((((...........)))))).))).)))))).))).)))).)...)))))...)))....

Structure

aacgg   -ac     -cu c    A   C      C   A      guga 
     gua   gccag   g caca ACC GUAGAU CGA CUUGUG    c
     |||   |||||   | |||| ||| |||||| ||| ||||||    u
     cau   cgguc   c guGU UGG UAUCUA GCU GAACgc    g
-ucga   aaa     cuu u    A   A      U   C      gucg 

Annotation confidence High

Genome context

14: 15650826-15650927 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ola-mir-100-2

Mature ola-miR-100-5p

• Accession: MIMAT0022614
• Description: Oryzias latipes ola-miR-100-5p mature miRNA
• Sequence: 24 - AACCCGUAGAUCCGAACUUGUG - 45
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-100-2-3p

• Accession: MIMAT0057127
• Description: Oryzias latipes ola-miR-100-2-3p mature miRNA
• Sequence: 59 - CAAGCUCGUAUCUAUAGGUAUG - 80
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8