Stem-loop ola-mir-223

Accession

MI0019510

Description

Oryzias latipes ola-mir-223 precursor miRNA

Sequence

119627 reads, 1768.0 reads per million, 48 experiments

gaccaggccccccacuuaGUGUAUUUGACAAGCUGAGUUGGACACUcuaucucugugagUGUCAGUUUGUCAAAUACCCCAagugaggugucacuuguc
.....(((.((.(((((.(.((((((((((((((......(((((((.........))))))))))))))))))))).).))))).)).))).......

Structure

--gacca   c  c     a U              GAGUUG       uau 
       ggc cc cacuu G GUAUUUGACAAGCU      GACACUc   c
       ||| || ||||| | ||||||||||||||      |||||||   u
       cug gg gugaA C CAUAAACUGUUUGA      CUGUgag   c
cuguuca   u  a     C C              ------       ugu 

Annotation confidence Medium

Genome context

14: 17328705-17328803 [-]

Mature ola-miR-223-5p

• Accession: MIMAT0057140
• Description: Oryzias latipes ola-miR-223-5p mature miRNA
• Sequence: 19 - GUGUAUUUGACAAGCUGAGUUGGACACU - 46
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-223-3p

• Accession: MIMAT0022630
• Description: Oryzias latipes ola-miR-223-3p mature miRNA
• Sequence: 60 - UGUCAGUUUGUCAAAUACCCCA - 81
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8