Stem-loop ola-mir-142

Accession

MI0019511

Description

Oryzias latipes ola-mir-142 precursor miRNA

Sequence

38520 reads, 608.0 reads per million, 40 experiments

ugguggauguacagugcagucaUCCAUAAAGUAGAAAGCACUACuaaacuccuugccaaaguGUAGUGUUUCCUACUUUAUGGAugaguguacuguuggcuuca
.....((.((((((((((.(((((((((((((((.(((((((((..................))))))))).))))))))))))))).))))))))..)).)).

Structure

uggug  u  --        g               A         uaaacucc 
     ga gu  acagugca ucaUCCAUAAAGUAG AAGCACUAC        u
     || ||  |||||||| ||||||||||||||| |||||||||         
     cu cg  ugucaugu aguAGGUAUUUCAUC UUUGUGAUG        u
----a  u  gu        g               C         ugaaaccg 

Annotation confidence High

Genome context

14: 21087850-21087953 [-]

Mature ola-miR-142-5p

• Accession: MIMAT0022631
• Description: Oryzias latipes ola-miR-142-5p mature miRNA
• Sequence: 23 - UCCAUAAAGUAGAAAGCACUAC - 44
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-142-3p

• Accession: MIMAT0057141
• Description: Oryzias latipes ola-miR-142-3p mature miRNA
• Sequence: 63 - GUAGUGUUUCCUACUUUAUGGA - 84
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8