Stem-loop ola-mir-10d

Accession

MI0019513

Description

Oryzias latipes ola-mir-10d precursor miRNA

Literature search

3 open access papers mention ola-mir-10d
(8 sentences)

Sequence

1006164 reads, 5101.0 reads per million, 46 experiments

gacgggaaccuucgcccauacaUACCCUGUAGAACCGAAUGUGUguggagcugccucagucaCAGAUUGGGUUCUAGGGGAGUCUaugggcgaugacuaaccauc
...((......(((((((((...(((((.(((((((.(((.((((..(((....)))...)))).))).))))))).))).)).))))))))).......))...

Structure

gac  -gaaccu         caU  -   G       G   G    -ug   c 
   gg       ucgcccaua   AC CCU UAGAACC AAU UGUg   gag u
   ||       |||||||||   || ||| ||||||| ||| ||||   |||  
   cc       agcggguaU   UG GGG AUCUUGG UUA ACac   cuc g
cua  aaucagu         --C  A   G       G   G    uga   c 

Annotation confidence High

Genome context

15: 4353705-4353809 [-]

Mature ola-miR-10d-5p

• Accession: MIMAT0022633
• Description: Oryzias latipes ola-miR-10d-5p mature miRNA
• Sequence: 23 - UACCCUGUAGAACCGAAUGUGU - 44
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-10d-3p

• Accession: MIMAT0057143
• Description: Oryzias latipes ola-miR-10d-3p mature miRNA
• Sequence: 63 - CAGAUUGGGUUCUAGGGGAGUCU - 85
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8