Stem-loop ola-mir-146a

Accession

MI0019514

Description

Oryzias latipes ola-mir-146a precursor miRNA

Literature search

3 open access papers mention ola-mir-146a
(8 sentences)

Sequence

180462 reads, 2372.0 reads per million, 49 experiments

guuuacgagaagugcucuacuaUGAGAACUGAAUUCCAUAGAUGGuagcuuuucuaggugucAUCUAUGGGCUCAGUUCUUUUGgcaugguacugguuugucgagc
(((((((((.((((((...(((.(((((((((..(((((((((((((.((.....)).))))))))))))).))))))))).)))...))))))..))))).))))

Structure

    -     -a      cua   U         AU             g  u 
guuu acgag  agugcu   cua GAGAACUGA  UCCAUAGAUGGua cu u
|||| |||||  ||||||   ||| |||||||||  ||||||||||||| || u
cgag uguuu  ucaugg   gGU UUCUUGACU  GGGUAUCUAcugu ga c
    c     gg      uac   U         -C             g  u 

Annotation confidence High

Genome context

15: 22802269-22802374 [-]

Mature ola-miR-146a-5p

• Accession: MIMAT0022635
• Description: Oryzias latipes ola-miR-146a-5p mature miRNA
• Sequence: 23 - UGAGAACUGAAUUCCAUAGAUGG - 45
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-146a-3p

• Accession: MIMAT0057144
• Description: Oryzias latipes ola-miR-146a-3p mature miRNA
• Sequence: 63 - AUCUAUGGGCUCAGUUCUUUUG - 84
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8