Stem-loop ola-mir-92b

Accession

MI0019516

Description

Oryzias latipes ola-mir-92b precursor miRNA

Literature search

1 open access papers mention ola-mir-92b
(2 sentences)

Sequence

1347228 reads, 16285.0 reads per million, 49 experiments

uuccucccgaggucgggcAGGUGCGGGAUGCAGUGCACUGUUgucguguucccccuccaaUAUUGCACUUGUCCCGGCCUCCCcggcccccggggcuaagaa
....(((((.(((((((.((((.(((((((.((((((.(((((..(........)..))))).))))))))))))))))).)))))))..))))).......

Structure

---uucc     -a       c    G       C      C     uc ugu 
       ucccg  ggucggg AGGU CGGGAUG AGUGCA UGUUg  g   u
       |||||  ||||||| |||| ||||||| |||||| |||||  |    
       ggggc  ccggcCC UCCG GCCCUGU UCACGU AUaac  c   c
aagaauc     cc       C    -       -      U     cu ccc 

Annotation confidence High

Genome context

16: 29384732-29384833 [+]

Mature ola-miR-92b-5p

• Accession: MIMAT0057145
• Description: Oryzias latipes ola-miR-92b-5p mature miRNA
• Sequence: 19 - AGGUGCGGGAUGCAGUGCACUGUU - 42
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-92b-3p

• Accession: MIMAT0022637
• Description: Oryzias latipes ola-miR-92b-3p mature miRNA
• Sequence: 61 - UAUUGCACUUGUCCCGGCCUCCC - 83
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8