Stem-loop ola-mir-125a

Accession

MI0019517

Description

Oryzias latipes ola-mir-125a precursor miRNA

Literature search

1 open access papers mention ola-mir-125a
(2 sentences)

Sequence

ccguaugccccucugUCCCUGAGACCCUUAACCUGUGaagucaaagcaggucACAGGUGAGGUCCUCGGGAACAgggcugcauucag
..(.((((..((((((.((((((..(((((.(((((((.((....))...))))))))))))..)))))).))))))..)))).)..

Structure

cc u    cc      C      AC     A       --a  c 
  g augc  cucugU CCUGAG  CCUUA CCUGUGa   gu a
  | ||||  |||||| ||||||  ||||| |||||||   ||  
  c uacg  gggACA GGGCUC  GGAGU GGACAcu   cg a
ga u    uc      A      CU     -       gga  a 

Annotation confidence Not enough data

Genome context

16: 11685123-11685209 [-]

Mature ola-miR-125a-5p

• Accession: MIMAT0022638
• Description: Oryzias latipes ola-miR-125a-5p mature miRNA
• Sequence: 16 - UCCCUGAGACCCUUAACCUGUG - 37
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-125a-3p

• Accession: MIMAT0022639
• Description: Oryzias latipes ola-miR-125a-3p mature miRNA
• Sequence: 53 - ACAGGUGAGGUCCUCGGGAACA - 74
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8