Stem-loop ola-mir-214

Accession

MI0019519

Description

Oryzias latipes ola-mir-214 precursor miRNA

Literature search

4 open access papers mention ola-mir-214
(37 sentences)

Sequence

427626 reads, 4340.0 reads per million, 49 experiments

gagcuaaaguugcagugugucuGCCUAUCUACACUUGCUGUGCAgaauauccuccaaccugUACAGCAGGCACAGACAGGCAGauaaacaaaacagagcgc
..(((...(((...((.(((((((((.(((...((((((((((((.............))))))))))))...))).))))))))).))..)))..)))..

Structure

ga   aaa   gca  g         A   ACA            aauau 
  gcu   guu   gu ugucuGCCU UCU   CUUGCUGUGCAg     c
  |||   |||   || ||||||||| |||   ||||||||||||     c
  cga   caa   ca auaGACGGA AGA   GGACGACAUguc     u
cg   -ga   -aa  a         C   CAC            caacc 

Annotation confidence High

Genome context

17: 16119235-16119335 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-214

Mature ola-miR-214-5p

• Accession: MIMAT0057146
• Description: Oryzias latipes ola-miR-214-5p mature miRNA
• Sequence: 23 - GCCUAUCUACACUUGCUGUGCA - 44
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-214-3p

• Accession: MIMAT0022640
• Description: Oryzias latipes ola-miR-214-3p mature miRNA
• Sequence: 62 - UACAGCAGGCACAGACAGGCAG - 83
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8