Stem-loop ola-mir-7

Accession

MI0019520

Description

Oryzias latipes ola-mir-7 precursor miRNA

Literature search

2 open access papers mention ola-mir-7
(7 sentences)

Sequence

480209 reads, 6968.0 reads per million, 48 experiments

gaagaaaguguugguagugcugaaUGGAAGACUAGUGAUUUUGUUGUGacguugauggaagaaCAACAAGUCCCAGUCUACCUCUcagcacaagcagucccuucagc
((((..(.((((....(((((((..((.(((((.(.(((((.(((((...............))))))))))).))))).))..))))))).)))).)..))))...

Structure

---    aa g    ggua       aU  A     A U     U     Gacguu 
   gaag  a uguu    gugcuga  GG AGACU G GAUUU GUUGU      g
   ||||  | ||||    |||||||  || ||||| | ||||| |||||      a
   cuuc  u acga    cacgacU  CC UCUGA C CUGAA CAACa      u
cga    cc g    ---a       CU  A     C -     -     agaagg 

Annotation confidence High

Genome context

17: 23201267-23201373 [+]

Mature ola-miR-7-5p

• Accession: MIMAT0022641
• Description: Oryzias latipes ola-miR-7-5p mature miRNA
• Sequence: 25 - UGGAAGACUAGUGAUUUUGUUGUG - 48
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-7-3p

• Accession: MIMAT0057147
• Description: Oryzias latipes ola-miR-7-3p mature miRNA
• Sequence: 64 - CAACAAGUCCCAGUCUACCUCU - 85
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8