Stem-loop ola-mir-460

Accession

MI0019523

Description

Oryzias latipes ola-mir-460 precursor miRNA

Literature search

1 open access papers mention ola-mir-460
(2 sentences)

Sequence

1335 reads, 26.0 reads per million, 30 experiments

ugggcuuuacaguuCCUGCAUUGUACACACUGUGCauauauguuacauaagCACAGCGCAUACAAUGUGGAUGcugugcuaccca
((((...(((((((((.((((((((..(.((((((.(((.......))).)))))).)..))))))))))).))))))...))))

Structure

    cuu      -   U        CA A      a   au 
uggg   uacagu uCC GCAUUGUA  C CUGUGC uau  g
||||   |||||| ||| ||||||||  | |||||| |||  u
accc   gugucG AGG UGUAACAU  G GACACg aua  u
    auc      U   -        AC C      a   ca 

Annotation confidence High

Genome context

17: 29024041-29024125 [-]

Mature ola-miR-460-5p

• Accession: MIMAT0022642
• Description: Oryzias latipes ola-miR-460-5p mature miRNA
• Sequence: 15 - CCUGCAUUGUACACACUGUGC - 35
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-460-3p

• Accession: MIMAT0022643
• Description: Oryzias latipes ola-miR-460-3p mature miRNA
• Sequence: 52 - CACAGCGCAUACAAUGUGGAUG - 73
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8