Stem-loop ola-mir-133-1

Accession

MI0019524

Description

Oryzias latipes ola-mir-133-1 precursor miRNA

Literature search

2 open access papers mention ola-mir-133-1
(2 sentences)

Sequence

3183073 reads, 15711.0 reads per million, 42 experiments

cucuaauccacaaugcuuugcuaaAGCUGGUAAAAUGGAACCAAAucaccucuugaauggauUUGGUCCCCUUCAACCAGCUGUagcuaugcuuugaaaucuacgag
..........(((.((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)).)))...........

Structure

-cucuaaucca   u  uuu    a       AA  U  A        accuc 
           caa gc   gcua AGCUGGU  AA GG ACCAAAuc     u
           ||| ||   |||| |||||||  || || ||||||||      
           guu cg   cgaU UCGACCA  UU CC UGGUUuag     u
gagcaucuaaa   u  uau    G       AC  C  C        guaag 

Annotation confidence High

Genome context

17: 29407313-29407419 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-133-1

Mature ola-miR-133-5p

• Accession: MIMAT0022559
• Description: Oryzias latipes ola-miR-133-5p mature miRNA
• Sequence: 25 - AGCUGGUAAAAUGGAACCAAA - 45
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-133-3p

• Accession: MIMAT0022560
• Description: Oryzias latipes ola-miR-133-3p mature miRNA
• Sequence: 63 - UUGGUCCCCUUCAACCAGCUGU - 84
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8