Stem-loop ola-mir-27a

Accession

MI0019527

Description

Oryzias latipes ola-mir-27a precursor miRNA

Literature search

2 open access papers mention ola-mir-27a
(11 sentences)

Sequence

469430 reads, 5234.0 reads per million, 48 experiments

ggguuugguggaggugaAGGGCUUAGCUCGCUCCGUGAACAguucagugaaaacucgugUUCACAGUGGCUAAGUUCCGCUccucacaaaccu
(((((((...((((.(..(((((((((.((((..(((((((....(((....)))..))))))))))))))))))))..).)))).)))))))

Structure

       gug    u aA         U    CC       guuc   g 
ggguuug   gagg g  GGGCUUAGC CGCU  GUGAACA    agu a
|||||||   |||| |  ||||||||| ||||  |||||||    |||  
uccaaac   cucc C  CUUGAAUCG GUGA  CACUUgu    uca a
       --a    U GC         -    --       --gc   a 

Annotation confidence High

Genome context

17: 29779201-29779293 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ola-mir-27a

Mature ola-miR-27a-5p

• Accession: MIMAT0057149
• Description: Oryzias latipes ola-miR-27a-5p mature miRNA
• Sequence: 18 - AGGGCUUAGCUCGCUCCGUGAACA - 41
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-27a-3p

• Accession: MIMAT0022646
• Description: Oryzias latipes ola-miR-27a-3p mature miRNA
• Sequence: 60 - UUCACAGUGGCUAAGUUCCGCU - 81
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8