miRBase entry: ola-mir-23a-2

Stem-loop ola-mir-23a-2

Accession

MI0019528

Description

Oryzias latipes ola-mir-23a-2 precursor miRNA

Sequence

gguuugcuccggcuggagggauuccuggcagagugauuugguucugaugucauguaaAUCACAUUGCCAGGGAUUUCCAaccagcuagagcuggaacu
(((((((((.((((((.((((((((((((((.((((((((....((....))..)))))))).))))))))))))))...)))))).))))..)))))

Structure

     --    c      --a              a        guuc  a 
gguuu  gcuc ggcugg   gggauuccuggcag gugauuug    ug u
|||||  |||| ||||||   |||||||||||||| ||||||||    ||  
ucaag  cgag ucgacc   CUUUAGGGACCGUU CACUAaau    ac g
     gu    a      aAC              A        --gu  u

Annotation confidence Not enough data

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Genome context

17: 29781101-29781198 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ola-mir-23a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ola-miR-23a

Accession	MIMAT0022583
Description	Oryzias latipes ola-miR-23a mature miRNA
Sequence	58 - AUCACAUUGCCAGGGAUUUCCA - 79
Evidence	experimental SOLiD [1]

References

PubMed ID: 21143817
Discovery and characterization of medaka miRNA genes by next generation sequencing platform
Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
BMC Genomics (2010) 11:S8