Stem-loop ola-mir-27d

Accession

MI0019529

Description

Oryzias latipes ola-mir-27d precursor miRNA

Sequence

826533 reads, 7843.0 reads per million, 49 experiments

uugggcucagaugCAGGACUUAGUUCAUUGGUGAGCAuugagccacacaggaauugUUCACAGUGGCUAAGUUCAGUaccugaccuga
(((((.((((.(((.(((((((((.(((((.((((((.....((.....))...)))))))))))))))))))).))).)))))))))

Structure

     c    a   A         U     G      uugag  a 
uuggg ucag ugC GGACUUAGU CAUUG UGAGCA     cc c
||||| |||| ||| ||||||||| ||||| ||||||     || a
agucc aguc aUG CUUGAAUCG GUGAC ACUUgu     gg c
     -    c   A         -     -      --uaa  a 

Annotation confidence High

Genome context

17: 31554033-31554120 [-]

Mature ola-miR-27d-5p

• Accession: MIMAT0057150
• Description: Oryzias latipes ola-miR-27d-5p mature miRNA
• Sequence: 14 - CAGGACUUAGUUCAUUGGUGAGCA - 37
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-27d-3p

• Accession: MIMAT0022647
• Description: Oryzias latipes ola-miR-27d-3p mature miRNA
• Sequence: 57 - UUCACAGUGGCUAAGUUCAGU - 77
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8