Stem-loop ola-mir-31

Accession

MI0019530

Description

Oryzias latipes ola-mir-31 precursor miRNA

Sequence

84407 reads, 1421.0 reads per million, 39 experiments

ugauuuucauauuggguccugaaugaGGGCAAGAUGUUGGCAUAGCUGUugaagugaaggcucuGCUAUGCCAGUGACUUGCCAUccuucacuucccuguugcagcca
.............(((...((((.((.((((((...((((((((((.(((........)))...))))))))))...)))))).)).))))...)))...........

Structure

ugauuuucauauu   ucc    u  G      AUG          --U   gaa 
             ggg   ugaa ga GGCAAG   UUGGCAUAGC   GUu   g
             |||   |||| || ||||||   ||||||||||   |||    
             ccc   acuu cU CCGUUC   GACCGUAUCG   cgg   u
--accgacguugu   uuc    c  A      AGU          ucu   aag 

Annotation confidence High

Genome context

18: 10684065-10684172 [-]

Mature ola-miR-31-5p

• Accession: MIMAT0022649
• Description: Oryzias latipes ola-miR-31-5p mature miRNA
• Sequence: 27 - GGGCAAGAUGUUGGCAUAGCUGU - 49
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-31-3p

• Accession: MIMAT0057151
• Description: Oryzias latipes ola-miR-31-3p mature miRNA
• Sequence: 65 - GCUAUGCCAGUGACUUGCCAU - 85
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8