Stem-loop ola-mir-338-2

Accession

MI0019531

Description

Oryzias latipes ola-mir-338-2 precursor miRNA

Sequence

49052 reads, 429.0 reads per million, 46 experiments

ugguguuguugucuccuggaAACAACAUCCUGAUGCUGUCUGGGUguggaaaagcagaacUCCAGCAUCAGUGAUUUUGUUgcugggggagagcaaaaucug
.(((.(((((.((((((((.(((((.((((((((((((...((((.((......))..))))))))))))).))).))))).)))))))).))))).)))..

Structure

-u   g     g        a     C   -         UCU    -g  ga 
  ggu uuguu ucuccugg AACAA AUC CUGAUGCUG   GGGU  ug  a
  ||| ||||| |||||||| ||||| ||| |||||||||   ||||  ||   
  cua aacga aggggguc UUGUU UAG GACUACGAC   CUca  ac  a
gu   a     g        g     U   U         ---    ag  ga 

Annotation confidence High

Genome context

19: 2103870-2103971 [-]

Mature ola-miR-338-2-5p

• Accession: MIMAT0057152
• Description: Oryzias latipes ola-miR-338-2-5p mature miRNA
• Sequence: 21 - AACAACAUCCUGAUGCUGUCUGGGU - 45
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-338-3p

• Accession: MIMAT0022580
• Description: Oryzias latipes ola-miR-338-3p mature miRNA
• Sequence: 61 - UCCAGCAUCAGUGAUUUUGUU - 81
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8