Stem-loop ola-mir-15a

Accession

MI0019534

Description

Oryzias latipes ola-mir-15a precursor miRNA

Literature search

3 open access papers mention ola-mir-15a
(6 sentences)

Sequence

160906 reads, 3350.0 reads per million, 49 experiments

gcugaccggagcucuggugaugcugUAGCAGCACGGAAUGGUUUGuggguuauugugagaugCAGGCCAUGCCGUGCUGCCGCaguaaugcccgauuacacaac
(((......)))((.((((.((((((.(((((((((.((((((((((..(((...)))..)))))))))).))))))))).)))))).)))).)).........

Structure

gcugaccggagc  u    a      A         A          gg   u 
            uc ggug ugcugU GCAGCACGG AUGGUUUGug  uua  
            || |||| |||||| ||||||||| ||||||||||  ||| u
            ag ccgu augaCG CGUCGUGCC UACCGGACgu  agu  
---caacacauu  c    a      C         G          ag   g 

Annotation confidence High

Genome context

21: 11191711-11191814 [+]

Mature ola-miR-15a-5p

• Accession: MIMAT0022650
• Description: Oryzias latipes ola-miR-15a-5p mature miRNA
• Sequence: 26 - UAGCAGCACGGAAUGGUUUG - 45
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-15a-3p

• Accession: MIMAT0057154
• Description: Oryzias latipes ola-miR-15a-3p mature miRNA
• Sequence: 63 - CAGGCCAUGCCGUGCUGCCGC - 83
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8