Stem-loop ola-mir-10b

Accession

MI0019535

Description

Oryzias latipes ola-mir-10b precursor miRNA

Literature search

6 open access papers mention ola-mir-10b
(11 sentences)

Sequence

867905 reads, 4720.0 reads per million, 49 experiments

ucguggcuucccgucgucuauauaUACCCUGUAGAACCGAAUUUGUgugaagaacgcucaaucACAGAUUCGAUUCUAGGGGAGUauauggucgaugaaaaaacuuca
...........(((((.((((((((.((((.(((((.(((((((((((((.......)))..)))))))))).))))))))).)))))))).)))))...........

Structure

ucguggcuucc     u        A    G     C          --   ag 
           cgucg cuauauaU CCCU UAGAA CGAAUUUGUg  uga  a
           ||||| |||||||| |||| ||||| ||||||||||  |||  a
           guagc gguauaUG GGGG AUCUU GCUUAGACAc  acu  c
acuucaaaaaa     u        A    -     A          ua   cg 

Annotation confidence High

Genome context

21: 24625727-24625834 [+]

Mature ola-miR-10b-5p

• Accession: MIMAT0022651
• Description: Oryzias latipes ola-miR-10b-5p mature miRNA
• Sequence: 25 - UACCCUGUAGAACCGAAUUUGU - 46
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-10b-3p

• Accession: MIMAT0057155
• Description: Oryzias latipes ola-miR-10b-3p mature miRNA
• Sequence: 64 - ACAGAUUCGAUUCUAGGGGAGU - 85
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8