Stem-loop ola-mir-148

Accession

MI0019536

Description

Oryzias latipes ola-mir-148 precursor miRNA

Sequence

12510 reads, 1248.0 reads per million, 46 experiments

uggcacuguggcuuuccaaauaAAGUUCUGUGAUACACUCAGAcucuuaacugcuugcagUCAGUGCAUUACAGAACUUUguuuugggaguuaauauuuua
........((((((((.(((((((((((((((((.((((..(((((..........).)))))))).))))))))))))))))).))))))))........

Structure

uggcacug        c                 A    CA    - uuaa 
        uggcuuuc aaauaAAGUUCUGUGAU CACU  GAcu c    c
        |||||||| ||||||||||||||||| ||||  |||| |     
        auugaggg uuugUUUCAAGACAUUA GUGA  CUga g    u
auuuuaua        u                 C    --    c uucg 

Annotation confidence High

Genome context

21: 24768738-24768838 [+]

Mature ola-miR-148-5p

• Accession: MIMAT0057156
• Description: Oryzias latipes ola-miR-148-5p mature miRNA
• Sequence: 23 - AAGUUCUGUGAUACACUCAGA - 43
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-148-3p

• Accession: MIMAT0022652
• Description: Oryzias latipes ola-miR-148-3p mature miRNA
• Sequence: 61 - UCAGUGCAUUACAGAACUUU - 80
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8