Stem-loop ola-mir-92a-1

Accession

MI0019537

Description

Oryzias latipes ola-mir-92a-1 precursor miRNA

Literature search

2 open access papers mention ola-mir-92a-1
(3 sentences)

Sequence

3337146 reads, 40137.0 reads per million, 49 experiments

cagaagcgaacccuuucugugcAGGUUGGGAGAGGUGGCAAUGCUcugugcuugggguggUAUUGCACUUGUCCCGGCCUGuugaggacauggggacuguucug
(((((..(..(((.((((..(((((((((((.(((((.(((((((((........)).)))))))))))).)))))))))))..))))...)))..)..)))))

Structure

     gc aa   --u    gu           G     G       -  gug 
cagaa  g  ccc   uucu  gcAGGUUGGGA AGGUG CAAUGCU cu   c
|||||  |  |||   ||||  ||||||||||| ||||| ||||||| ||    
gucuu  c  ggg   agga  uGUCCGGCCCU UUCAC GUUAUgg gg   u
     gu ag   uac    gu           G     -       u  ggu 

Annotation confidence High

Genome context

21: 25693131-25693234 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ola-mir-92a-1

Mature ola-miR-92a-1-5p

• Accession: MIMAT0057074
• Description: Oryzias latipes ola-miR-92a-1-5p mature miRNA
• Sequence: 23 - AGGUUGGGAGAGGUGGCAAUGCU - 45
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-92a-3p

• Accession: MIMAT0022534
• Description: Oryzias latipes ola-miR-92a-3p mature miRNA
• Sequence: 61 - UAUUGCACUUGUCCCGGCCUG - 81
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8