Stem-loop ola-mir-29b-2

Accession

MI0019545

Description

Oryzias latipes ola-mir-29b-2 precursor miRNA

Literature search

2 open access papers mention ola-mir-29b-2
(16 sentences)

Sequence

46295 reads, 665.0 reads per million, 46 experiments

guuggucuucccuaagaagCUGGUUUCACGUGGUGGUUUAGAugugucuuucuguugucUAGCACCAUUUGAAAUCAGUGUucuuggggacagcaggac
((((....((((((((((((((((((((.((((((..(((((((...........))))))))))))).)))))))))).)))))))))))))).....

Structure

-----    gucu          -          C      GU       uguc 
     guug    ucccuaagaa gCUGGUUUCA GUGGUG  UUAGAug    u
     ||||    |||||||||| |||||||||| ||||||  |||||||    u
     cgac    agggguucuU UGACUAAAGU UACCAC  GAUcugu    u
cagga    ----          G          U      --       uguc 

Annotation confidence High

Genome context

23: 8740355-8740453 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-29b-2

Mature ola-miR-29b-2-5p

• Accession: MIMAT0057095
• Description: Oryzias latipes ola-miR-29b-2-5p mature miRNA
• Sequence: 20 - CUGGUUUCACGUGGUGGUUUAGA - 42
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-29b-3p

• Accession: MIMAT0022569
• Description: Oryzias latipes ola-miR-29b-3p mature miRNA
• Sequence: 60 - UAGCACCAUUUGAAAUCAGUGU - 81
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8