Stem-loop ola-mir-29c

Accession

MI0019546

Description

Oryzias latipes ola-mir-29c precursor miRNA

Literature search

2 open access papers mention ola-mir-29c
(14 sentences)

Sequence

97247 reads, 1037.0 reads per million, 46 experiments

uacauaugccacucaaagauaACUGAUUUCCUCUGGUGUUUAGAgccuucugcagccuucUAGCACCAUUUGAAAUCGGUUAugacacuguggaacacugca
........((((......((((((((((((...(((((((.(((((........))..))))))))))...))))))))))))......)))).........

Structure

-uacauaug    ucaaag            CUC       U   --  cuu 
         ccac      auaACUGAUUUC   UGGUGUU AGA  gc   c
         ||||      ||||||||||||   ||||||| |||  ||    
         ggug      uAUUGGCUAAAG   ACCACGA Ucu  cg   u
acgucacaa    ucacag            UUU       -   uc  acg 

Annotation confidence High

Genome context

23: 8740492-8740593 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-29c

Mature ola-miR-29c-5p

• Accession: MIMAT0057160
• Description: Oryzias latipes ola-miR-29c-5p mature miRNA
• Sequence: 22 - ACUGAUUUCCUCUGGUGUUUAGA - 44
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-29c-3p

• Accession: MIMAT0022656
• Description: Oryzias latipes ola-miR-29c-3p mature miRNA
• Sequence: 61 - UAGCACCAUUUGAAAUCGGUUA - 82
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8