Stem-loop ola-mir-135b

Accession

MI0019547

Description

Oryzias latipes ola-mir-135b precursor miRNA

Sequence

40370 reads, 312.0 reads per million, 39 experiments

auugcuguugugucuUAUGGCUUUUUAUUCCUACGUGAugguagauggguucaUGUAGGAGUAGAAGCCACUAAacacgcggugagugcu
.(((((((.((((.(((((((((((.((((((((((((............)))))))))))))))))))).)))))))))))))).....

Structure

----a       u    c   -        U            uggua 
     uugcugu gugu uUA UGGCUUUU AUUCCUACGUGA     g
     ||||||| |||| ||| |||||||| ||||||||||||      
     aguggcg caca AAU ACCGAAGA UGAGGAUGUacu     a
ucgug       -    -   C        -            ugggu 

Annotation confidence High

Genome context

23: 13494412-13494501 [+]

Mature ola-miR-135b-5p

• Accession: MIMAT0022657
• Description: Oryzias latipes ola-miR-135b-5p mature miRNA
• Sequence: 16 - UAUGGCUUUUUAUUCCUACGUGA - 38
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-135b-3p

• Accession: MIMAT0057161
• Description: Oryzias latipes ola-miR-135b-3p mature miRNA
• Sequence: 54 - UGUAGGAGUAGAAGCCACUAA - 74
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8