Stem-loop ola-mir-206

Accession

MI0019552

Description

Oryzias latipes ola-mir-206 precursor miRNA

Literature search

3 open access papers mention ola-mir-206
(8 sentences)

Sequence

2620248 reads, 12084.0 reads per million, 49 experiments

aguuguucccucuugugaggACAUGCUUCCUUAUAUCCCCAUauuaauacaccacuuaUGGAAUGUAAGGAAGUGUGUGguuucaagaggacuugagcau
...((((((((((((.((..((((((((((((((((..(((((.............))))).))))))))))))))))..)).)))))))....))))).

Structure

agu     ----       u  gg                CC     uuaau 
   uguuc    ccucuug ga  ACAUGCUUCCUUAUAU  CCAUa     a
   |||||    ||||||| ||  ||||||||||||||||  |||||     c
   acgag    ggagaac uu  UGUGUGAAGGAAUGUA  GGUau     a
--u     uuca       u  gG                -A     ucacc 

Annotation confidence High

Genome context

24: 13641157-13641256 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-206

Mature ola-miR-206-5p

• Accession: MIMAT0057163
• Description: Oryzias latipes ola-miR-206-5p mature miRNA
• Sequence: 21 - ACAUGCUUCCUUAUAUCCCCAU - 42
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-206-3p

• Accession: MIMAT0022659
• Description: Oryzias latipes ola-miR-206-3p mature miRNA
• Sequence: 59 - UGGAAUGUAAGGAAGUGUGUG - 79
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8