Stem-loop ola-mir-133-3

Accession

MI0019553

Description

Oryzias latipes ola-mir-133-3 precursor miRNA

Literature search

2 open access papers mention ola-mir-133-3
(2 sentences)

Sequence

1393543 reads, 6350.0 reads per million, 44 experiments

gaagcaacucgccuugcugugGCUGGUCAAACGGAACCAAGUCagguguuucagagagguUUGGUCCCCUUCAACCAGCUacugcgucgugaaucauauc
........((((..(((.(((((((((..((.((.((((((((..............)))))))).)).))..))))))))).)))..))))........

Structure

gaagcaac    cu   u         CA  C  A        aggugu 
        ucgc  ugc gugGCUGGU  AA GG ACCAAGUC      u
        ||||  ||| |||||||||  || || ||||||||       
        agug  gcg caUCGACCA  UU CC UGGUUugg      u
cuauacua    cu   u         AC  C  C        agagac 

Annotation confidence High

Genome context

24: 13641851-13641950 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ola-mir-133-3

Mature ola-miR-133-3-5p

• Accession: MIMAT0057164
• Description: Oryzias latipes ola-miR-133-3-5p mature miRNA
• Sequence: 22 - GCUGGUCAAACGGAACCAAGUC - 43
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-133-3p

• Accession: MIMAT0022560
• Description: Oryzias latipes ola-miR-133-3p mature miRNA
• Sequence: 61 - UUGGUCCCCUUCAACCAGCU - 80
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8